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Intron Name: Anas_platyrhynchos_platyrhynchos_5_38354673_38361851_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

38354673 - 38361851

Intron Length:

7179

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAGAC

5'SS Class:

strong_major

3'SS Sequence:

TGTTCTTTTCTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTCAT

U12 Branch Point Sequence:

ATGTCATTACCG

Flanking Amino Acid:

ALNVICVSLKFPNKTVAQVA

Intron Amino Acid Position:

1325

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.8

74.6

28.6

Major BPS

0.65

1.1

77.4

37.3

Major PPT

84.3

0.77

0.8

77.4

36.9

Minor 5ss

25.3

-2.8

3.2

31.7

42.9

Minor BPS

53.8

-0

62.94

44.7

Associated Gene:

Gene:

RALGAPA1

Ensembl Gene ID:

ENSAPLG00000011153

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025115

38299610 - 38426660

127051

ENSAPLT00000023971

38299610 - 38426660

127051

ENSAPLT00000011696

38299610 - 38426660

127051