Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38361961_38366378_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

38361961 - 38366378

Intron Length:

4418

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGTCAT

5'SS Class:

strong_major

3'SS Sequence:

CGCTGTTTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

AGCTCTTTATCT

Flanking Amino Acid:

SAREEPSGPARCVALCSLGI

Intron Amino Acid Position:

1288

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.9

78.3

37.9

Major BPS

83.9

0.84

73.9

41.3

Major PPT

78.3

0.64

0.9

71.9

Minor 5ss

36.4

-1.5

51.1

45.2

Minor BPS

63.1

0.49

1.6

74.8

42.2

Associated Gene:

Gene:

RALGAPA1

Ensembl Gene ID:

ENSAPLG00000011153

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025115

38299610 - 38426660

127051

ENSAPLT00000023971

38299610 - 38426660

127051

ENSAPLT00000011696

38299610 - 38426660

127051