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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38393966_38394392_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38393966 - 38394392
Intron Length:
427

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAATTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCTCCTTTTATT
Flanking Amino Acid:
AGRLAGPLFQTLIVAWIKAN
Intron Amino Acid Position:
621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
76.1
35
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
83.6
0.76
0.8
82.5
33.8
Minor 5ss
24.8
-2.9
3.5
33.3
41.8
Minor BPS
61.8
0.45
1.6
76.99
39.9

Associated Gene:

Gene:
RALGAPA1
Ensembl Gene ID:
ENSAPLG00000011153
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025115
38299610 - 38426660
127051
ENSAPLT00000023971
38299610 - 38426660
127051
ENSAPLT00000011696
38299610 - 38426660
127051