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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38394523_38395753_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38394523 - 38395753
Intron Length:
1231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAAATGC
5'SS Class:
major
3'SS Sequence:
TATTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
CTAAGTTTAATA
Flanking Amino Acid:
VVQVTMDKKTWEQMLLVLLR
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
61.9
37.7
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
86.3
0.82
0.8
80.9
36.4
Minor 5ss
37.8
-1.4
3.2
47.6
43.3
Minor BPS
50.7
0.02
1.8
60.24
40.4

Associated Gene:

Gene:
RALGAPA1
Ensembl Gene ID:
ENSAPLG00000011153
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025115
38299610 - 38426660
127051
ENSAPLT00000023971
38299610 - 38426660
127051
ENSAPLT00000011696
38299610 - 38426660
127051