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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38395903_38398831_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38395903 - 38398831
Intron Length:
2929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACTT
Flanking Amino Acid:
VRAGVQSVLQVFIINSSNIF
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
80.4
33.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
90.6
0.91
0.7
85.1
28.5
Minor 5ss
40
-1.1
3.2
56.4
48
Minor BPS
70.1
0.71
1.5
86.64
33.8

Associated Gene:

Gene:
RALGAPA1
Ensembl Gene ID:
ENSAPLG00000011153
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011696
38299610 - 38426660
127051
ENSAPLT00000025115
38299610 - 38426660
127051
ENSAPLT00000023971
38299610 - 38426660
127051