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Intron Name: Anas_platyrhynchos_platyrhynchos_5_38399648_38401686_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

38399648 - 38401686

Intron Length:

2039

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGAAC

5'SS Class:

strong_major

3'SS Sequence:

TTTCTACTCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTAAC

U12 Branch Point Sequence:

TCTGTTTCTACT

Flanking Amino Acid:

VNFLTEIFRQAFLLPICEAA

Intron Amino Acid Position:

418

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

75.4

34.2

Major BPS

65.7

0.39

1.2

67.4

36.7

Major PPT

81.9

0.72

0.8

35.7

Minor 5ss

31.9

-2.1

3.2

42.1

Minor BPS

47.1

-0.1

1.9

66.95

44.2

Associated Gene:

Gene:

RALGAPA1

Ensembl Gene ID:

ENSAPLG00000011153

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025115

38299610 - 38426660

127051

ENSAPLT00000023971

38299610 - 38426660

127051

ENSAPLT00000011696

38299610 - 38426660

127051