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Intron Name: Anas_platyrhynchos_platyrhynchos_5_38401927_38402281_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

38401927 - 38402281

Intron Length:

355

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAATCA

5'SS Class:

strong_major

3'SS Sequence:

ATTTTTGTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

TTCTCTTTAATT

Flanking Amino Acid:

EGENVPKNIQRAAASMASRE

Intron Amino Acid Position:

338

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.75

0.9

73.8

30.8

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

87.1

0.83

0.8

85.1

34.9

Minor 5ss

37.6

-1.4

3.1

48.6

47.1

Minor BPS

83.8

1.14

91.31

32.6

Associated Gene:

Gene:

RALGAPA1

Ensembl Gene ID:

ENSAPLG00000011153

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025115

38299610 - 38426660

127051

ENSAPLT00000023971

38299610 - 38426660

127051

ENSAPLT00000011696

38299610 - 38426660

127051