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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38407433_38410181_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38407433 - 38410181
Intron Length:
2749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
CTTTATCCAACA
Flanking Amino Acid:
EALLKYIVIQVKSLEWKNKE
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.2
29.4
Major BPS
75.1
0.62
1
65.6
41
Major PPT
77.5
0.62
1
75.7
38.5
Minor 5ss
48.9
-0.1
2.4
68.1
42.9
Minor BPS
47.5
-0.1
2
65.29
41

Associated Gene:

Gene:
RALGAPA1
Ensembl Gene ID:
ENSAPLG00000011153
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023971
38299610 - 38426660
127051
ENSAPLT00000011696
38299610 - 38426660
127051
ENSAPLT00000025115
38299610 - 38426660
127051