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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38413045_38413590_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38413045 - 38413590
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
GACAACAAAATT
Flanking Amino Acid:
IHQRWQFHSIGLILKKLLHT
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
100
1.12
0.4
100
0
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
40.7
-0.6
1.9
52.77
41.8

Associated Gene:

Gene:
RALGAPA1
Ensembl Gene ID:
ENSAPLG00000011153
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011696
38299610 - 38426660
127051
ENSAPLT00000025115
38299610 - 38426660
127051
ENSAPLT00000023971
38299610 - 38426660
127051