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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38413649_38415104_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38413649 - 38415104
Intron Length:
1456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CATTTTTTATTT
Flanking Amino Acid:
ELDSILFIFEKILQLLPERI
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
94.8
1.01
0.5
92.6
17.3
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
58.5
0.34
1.6
71.82
40.2

Associated Gene:

Gene:
RALGAPA1
Ensembl Gene ID:
ENSAPLG00000011153
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025115
38299610 - 38426660
127051
ENSAPLT00000023971
38299610 - 38426660
127051
ENSAPLT00000011696
38299610 - 38426660
127051