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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_384272_384462_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
384272 - 384462
Intron Length:
191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAA
U12 Branch Point Sequence:
CAATTGTGAGTC
Flanking Amino Acid:
PRPTFPGAPGFWPGMIQTGQ
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
48.1
-0.1
0.9
53.4
30.8
Major PPT
88.8
0.87
0.7
81
31
Minor 5ss
41.5
-0.9
2.9
50
46.3
Minor BPS
39.3
-0.8
2.1
44.55
37.6

Associated Gene:

Gene:
TEAD1
Ensembl Gene ID:
ENSAPLG00000016417
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037311
355120 - 508802
153683
ENSAPLT00000017135
355120 - 508802
153683
ENSAPLT00000042611
355120 - 508802
153683
ENSAPLT00000040884
355120 - 508802
153683