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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38433542_38439573_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38433542 - 38439573
Intron Length:
6032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGCA
5'SS Class:
major
3'SS Sequence:
TTCTTATTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTC
Flanking Amino Acid:
SSVSEEGDSSEMDDEDCERR
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.2
57.8
41.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81.7
0.71
0.7
81.3
29.5
Minor 5ss
34
-1.8
3.7
47.9
47.7
Minor BPS
72.6
0.69
1.5
81.59
33

Associated Gene:

Gene:
BRMS1L
Ensembl Gene ID:
ENSAPLG00000012253
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012788
38433406 - 38452190
18785