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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38439665_38441957_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38439665 - 38441957
Intron Length:
2293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTGCTTTATTT
Flanking Amino Acid:
LEKQFTDLKDQLYKERLSQV
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.2
0.59
1.1
80
36.9
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
65.7
0.57
1.7
83.14
39

Associated Gene:

Gene:
BRMS1L
Ensembl Gene ID:
ENSAPLG00000012253
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012788
38433406 - 38452190
18785