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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38442086_38443620_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38442086 - 38443620
Intron Length:
1535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCATA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTGATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTTGCTTGATT
Flanking Amino Acid:
ENMQIRTKVAGIYRELCLES
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
78
38.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76.1
0.59
1
69
40.8
Minor 5ss
41.6
-0.9
3.2
56.7
47.6
Minor BPS
68.5
0.66
1.7
85.14
35.4

Associated Gene:

Gene:
BRMS1L
Ensembl Gene ID:
ENSAPLG00000012253
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012788
38433406 - 38452190
18785