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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38446338_38446696_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38446338 - 38446696
Intron Length:
359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGGA
5'SS Class:
strong_major
3'SS Sequence:
TATGTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGATTCATAACA
Flanking Amino Acid:
EDRHSIDITSELWNDELQSR
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
70.9
35
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
84.3
0.77
0.8
81.3
36
Minor 5ss
26
-2.8
3
31.8
42.6
Minor BPS
65.1
0.47
1.6
74.03
36.9

Associated Gene:

Gene:
BRMS1L
Ensembl Gene ID:
ENSAPLG00000012253
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012788
38433406 - 38452190
18785