About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38446781_38448011_F

Intron Information:

Intron Rank:
6
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
38446781 - 38448011
Intron Length:
1231

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
CAG|ATATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TTAACTTTTCCAC|G
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTCCTTAACT
Flanking Amino Acid:
PDKKKPVVVSGPYIVYMLQD
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
38.4
-0.7
3.5
62.3
44.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
44.6
-0.3
3.2
65.7
45
Minor 5ss
100
1.66
0.5
100
0
Minor BPS
100
1.65
0.3
108.3
8.33

Associated Gene:

Gene:
BRMS1L
Ensembl Gene ID:
ENSAPLG00000012253
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012788
38433406 - 38452190
18785