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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38554658_38557216_R

Intron Information:

Intron Rank:
132903
Intron Class:
major
Intron Phase:
Intron Coordinates:
38554658 - 38557216
Intron Length:
2559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCACA
5'SS Class:
major
3'SS Sequence:
CTCAACCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCCTTCTCAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
71.6
40.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
61.4
0.26
0.9
53.7
35.3
Minor 5ss
45.2
-0.5
2.6
58.9
45.3
Minor BPS
64.5
0.43
1.6
69.77
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018727
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040918
38553439 - 38557238
3800