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Intron Name: Anas_platyrhynchos_platyrhynchos_5_3855748_3864124_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3855748 - 3864124

Intron Length:

8377

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCTGA

5'SS Class:

strong_major

3'SS Sequence:

GTTCTCCCGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAT

U12 Branch Point Sequence:

ATTGTCTGAACC

Flanking Amino Acid:

LFPPGITYKPGDNYPVQFIP

Intron Amino Acid Position:

302

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.8

0.91

0.9

38.1

Major BPS

84.8

0.86

85.7

34.9

Major PPT

70.6

0.46

65.6

36.2

Minor 5ss

43.2

-0.7

2.9

56.2

47.9

Minor BPS

64.2

0.43

1.5

73.27

37.5

Associated Gene:

Gene:

SOX6

Ensembl Gene ID:

ENSAPLG00000008744

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022912

3768142 - 4089655

321514

ENSAPLT00000009100

3768142 - 4089655

321514

ENSAPLT00000026177

3768142 - 4008048

239907

ENSAPLT00000025325

3774651 - 4014215

239565