Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38557679_38558000_F

Intron Information:

Intron Rank:

124525

Intron Class:

major

Intron Phase:

Intron Coordinates:

38557679 - 38558000

Intron Length:

322

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTACG

5'SS Class:

strong_major

3'SS Sequence:

CTGTTTTTTGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

TGTTTTTTGAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.6

1.07

0.7

84.4

33.5

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

76.8

0.6

78.6

33.6

Minor 5ss

-1.6

2.6

43.2

43.8

Minor BPS

58.5

0.12

1.5

63.56

38.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017153

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032199

38557535 - 38558461

927