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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38557679_38570786_F

Intron Information:

Intron Rank:
124527
Intron Class:
major
Intron Phase:
Intron Coordinates:
38557679 - 38570786
Intron Length:
13108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTACG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
GAATTATGACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.4
33.5
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
100
1.12
0.4
100
0
Minor 5ss
36
-1.6
2.6
43.2
43.8
Minor BPS
43.6
-0.5
1.9
51.37
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017153
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042621
38557599 - 38572073
14475