Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38557679_38584267_F

Intron Information:

Intron Rank:

124524

Intron Class:

major

Intron Phase:

Intron Coordinates:

38557679 - 38584267

Intron Length:

26589

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTACG

5'SS Class:

strong_major

3'SS Sequence:

GTTTCTTTTTAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAA

U12 Branch Point Sequence:

TTTCTTTTTAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.6

1.07

0.7

84.4

33.5

Major BPS

78.4

0.71

0.9

69.4

37.7

Major PPT

78.8

0.65

83.1

32.3

Minor 5ss

-1.6

2.6

43.2

43.8

Minor BPS

49.4

-0.1

1.8

61.38

40.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017153

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030700

38556226 - 38585395

29170