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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_385795_393790_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
385795 - 393790
Intron Length:
7996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGTATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATAAACT
Flanking Amino Acid:
KVREIQAAIKVTSMDQTAKD
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
79
37.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
77.6
0.62
1
70
45
Minor 5ss
42.7
-0.8
3
57.9
46.7
Minor BPS
59.5
0.38
2.1
86.42
39.1

Associated Gene:

Gene:
TEAD1
Ensembl Gene ID:
ENSAPLG00000016417
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037311
355120 - 508802
153683