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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38621544_38622886_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38621544 - 38622886
Intron Length:
1343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGAAAT
5'SS Class:
major
3'SS Sequence:
GTTTTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TCAACATTAAGA
Flanking Amino Acid:
GLSPEYFQSVSCSGKRRKVQ
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
76.2
32.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
86.4
0.82
0.7
85.6
29.2
Minor 5ss
37
-1.5
3.1
51.2
40.4
Minor BPS
50
-0
2
62.26
43.4

Associated Gene:

Gene:
MBIP
Ensembl Gene ID:
ENSAPLG00000012769
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013305
38619912 - 38633653
13742
ENSAPLT00000038496
38619912 - 38630750
10839