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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38630598_38633521_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38630598 - 38633521
Intron Length:
2924

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTGTTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACAACAT
U12 Branch Point Sequence:
GCTCTGTTGAAG
Flanking Amino Acid:
LRSVVGLAGQLNLGDDIVKV
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
49.8
-0
1.1
57.3
37.7
Major PPT
66.8
0.38
1.1
67
38.3
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
42.3
-0.7
2.1
45.14
41.1

Associated Gene:

Gene:
MBIP
Ensembl Gene ID:
ENSAPLG00000012769
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013305
38619912 - 38633653
13742