Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38633824_38640501_F

Intron Information:

Intron Rank:

128645

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

38633824 - 38640501

Intron Length:

6678

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGCTGAGG

5'SS Class:

weak_major

3'SS Sequence:

TGTTTTTATGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TCTCCTTTATGT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.12

1.1

44.7

44.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

85.2

0.79

0.9

81.4

35.3

Minor 5ss

25.7

-2.8

3.1

30.7

42.9

Minor BPS

53.1

0.18

1.9

72.72

44.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019258

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032602

38633709 - 38665349

31641

ENSAPLT00000017877

38633709 - 38673829

40121