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Intron Name: Anas_platyrhynchos_platyrhynchos_5_3864246_3909034_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3864246 - 3909034

Intron Length:

44789

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TTCTGTTTAGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

TATTTCTGATCA

Flanking Amino Acid:

KINLLQQQIQVQGHMPPLMI

Intron Amino Acid Position:

262

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

1.2

76.2

39.9

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

80.5

0.69

0.9

77.3

35.6

Minor 5ss

31.7

-2.1

3.1

40.6

45.6

Minor BPS

60.4

0.32

1.7

73.29

38.2

Associated Gene:

Gene:

SOX6

Ensembl Gene ID:

ENSAPLG00000008744

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022912

3768142 - 4089655

321514

ENSAPLT00000009100

3768142 - 4089655

321514

ENSAPLT00000026177

3768142 - 4008048

239907

ENSAPLT00000025325

3774651 - 4014215

239565