Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38644603_38665020_F

Intron Information:

Intron Rank:

128661

Intron Class:

major

Intron Phase:

Intron Coordinates:

38644603 - 38665020

Intron Length:

20418

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTGAGTATG

5'SS Class:

strong_major

3'SS Sequence:

TCTCTCCAAATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

CTTACCTGAACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

79.9

34.9

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

66.6

0.37

0.9

63.1

Minor 5ss

36.3

-1.5

2.9

41.7

Minor BPS

69.3

0.59

1.5

76.34

39.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019258

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030346

38641889 - 38665070

23182