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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38648776_38649667_F

Intron Information:

Intron Rank:
128653
Intron Class:
major
Intron Phase:
Intron Coordinates:
38648776 - 38649667
Intron Length:
892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATCATT
5'SS Class:
major
3'SS Sequence:
CATTTTTTTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTGTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
74.6
41.7
Major BPS
100
1.24
0.5
100
0
Major PPT
77.3
0.61
1
78.2
33.7
Minor 5ss
44.9
-0.5
2.9
58.6
45.7
Minor BPS
71
0.74
2
91.07
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019258
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042987
38639682 - 38649932
10251
ENSAPLT00000033633
38641889 - 38649932
8044
ENSAPLT00000020630
38641889 - 38649932
8044