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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38671177_38673044_F

Intron Information:

Intron Rank:
128647
Intron Class:
major
Intron Phase:
Intron Coordinates:
38671177 - 38673044
Intron Length:
1868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGAAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CATTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
74.9
34.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.8
0.85
0.8
85.3
34.2
Minor 5ss
32.6
-2
3.1
42.6
44.5
Minor BPS
52.3
0.15
1.8
69.6
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019258
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017877
38633709 - 38673829
40121