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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38722017_38722753_R

Intron Information:

Intron Rank:
137282
Intron Class:
major
Intron Phase:
Intron Coordinates:
38722017 - 38722753
Intron Length:
737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTGG
5'SS Class:
major
3'SS Sequence:
TGAATTTTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ATTTTTCCAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
64.2
42.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
75.6
0.58
0.9
73.1
41.7
Minor 5ss
45.8
-0.4
2.5
58.8
45.7
Minor BPS
52.2
0.05
1.8
69.36
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021363
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025503
38721840 - 38723625
1786