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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38736985_38737723_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38736985 - 38737723
Intron Length:
739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
AGCTGCTGAAAG
Flanking Amino Acid:
GTNPDPRFSSISRFMAPSSG
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.1
35.1
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
86.3
0.82
0.7
80.9
24.2
Minor 5ss
33.7
-1.9
3.2
40.4
40
Minor BPS
45.4
-0.4
2
48.89
44.1

Associated Gene:

Gene:
NKX2-1
Ensembl Gene ID:
ENSAPLG00000026883
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038584
38735413 - 38742706
7294