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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38755821_38756416_F

Intron Information:

Intron Rank:
146137
Intron Class:
major
Intron Phase:
Intron Coordinates:
38755821 - 38756416
Intron Length:
596

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
ATTCTATTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTTACATATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.8
1.18
0.7
98.3
5.31
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
71.4
0.48
1.1
68.8
40.8
Minor 5ss
30
-2.3
3.8
44.9
43.2
Minor BPS
49.6
0.05
2
75.01
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028722
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018261
38755803 - 38758869
3067