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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38781774_38782710_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38781774 - 38782710
Intron Length:
937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TCGCTGTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CTGTCTCTAACC
Flanking Amino Acid:
WIETDRNHYPSSDESGPELS
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
71.2
40.3
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
70
0.45
0.9
61.1
40.1
Minor 5ss
36.8
-1.5
2.9
52.3
44.3
Minor BPS
62.2
0.36
1.7
70.56
41.2

Associated Gene:

Gene:
NKX2-8
Ensembl Gene ID:
ENSAPLG00000017304
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022524
38780980 - 38782876
1897