Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38807934_38810656_R

Intron Information:

Intron Rank:

131793

Intron Class:

major

Intron Phase:

Intron Coordinates:

38807934 - 38810656

Intron Length:

2723

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCCCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTACTAT

U12 Branch Point Sequence:

TTGCTACTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.6

1.03

0.7

88.4

18.8

Major BPS

49.9

-0

1.4

50.5

43.3

Major PPT

88.1

0.86

0.6

81.6

30.5

Minor 5ss

29.6

-2.3

2.6

32.7

42.2

Minor BPS

42.8

-0.4

62.85

41.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018119

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027625

38806202 - 38812660

6459

ENSAPLT00000025445

38806202 - 38811411

5210