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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38828090_38828971_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38828090 - 38828971
Intron Length:
882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCCGAC
U12 Branch Point Sequence:
CCGTGTCCGACG
Flanking Amino Acid:
MEPAFGEVNQL
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
71.1
40.4
Major BPS
46.4
-0.2
1.4
43.8
40.8
Major PPT
83.4
0.75
0.9
77.3
37
Minor 5ss
32.6
-2
3.1
35.3
41.4
Minor BPS
36
-1.2
2
34.4
40.9

Associated Gene:

Gene:
PAX9
Ensembl Gene ID:
ENSAPLG00000012856
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047639
38827191 - 38831258
4068