Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38828705_38828912_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

38828705 - 38828912

Intron Length:

208

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTGACATTT

5'SS Class:

weak_major

3'SS Sequence:

ACGAGTCGTTCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTGTGAC

U12 Branch Point Sequence:

GCTGTGACAACT

Flanking Amino Acid:

IRPLQNHWPC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.4

0.34

1.2

70.6

Major BPS

0.22

1.2

52.4

43.3

Major PPT

59.5

0.21

1.1

54.5

45.2

Minor 5ss

46.4

-0.4

3.2

69.4

41.4

Minor BPS

39.3

-0.7

2.3

57.08

45.5

Associated Gene:

Gene:

PAX9

Ensembl Gene ID:

ENSAPLG00000012856

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013376

38828703 - 38846664

17962