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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38829600_38830087_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38829600 - 38830087
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATTGCTTTAATT
Flanking Amino Acid:
YLGDPLHHRPSGGPGKRNPE
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
77
0.61
1
79.2
26.7
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
75.6
0.88
1.2
85.82
34.8

Associated Gene:

Gene:
PAX9
Ensembl Gene ID:
ENSAPLG00000012856
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047639
38827191 - 38831258
4068