About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38831929_38846409_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38831929 - 38846409
Intron Length:
14481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAGA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
ACTCCCTTAGAA
Flanking Amino Acid:
SLEQEAKYSQAPNGLPAVGS
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
87
0.83
0.7
84.5
23.4
Minor 5ss
31
-2.2
3.2
40
45.7
Minor BPS
55.7
0.18
1.7
64.93
40.9

Associated Gene:

Gene:
PAX9
Ensembl Gene ID:
ENSAPLG00000012856
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013376
38828703 - 38846664
17962