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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38852059_38854541_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38852059 - 38854541
Intron Length:
2483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAGTAAATAATA
Flanking Amino Acid:
LVPKIMRLGPGGAVMLLVYE
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
91.7
0.94
0.6
84.6
30.3
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
46.5
-0.2
2
60.11
39.3

Associated Gene:

Gene:
SLC25A21
Ensembl Gene ID:
ENSAPLG00000013311
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013881
38851911 - 39100717
248807