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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38855590_38866498_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38855590 - 38866498
Intron Length:
10909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCCCTTTTTATT
Flanking Amino Acid:
NVKNILPVNKDPNLEFLRKF
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.8
0.78
0.6
84.1
24
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
49.3
0.03
1.6
63.85
41.2

Associated Gene:

Gene:
SLC25A21
Ensembl Gene ID:
ENSAPLG00000013311
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017396
38842670 - 39100717
258048
ENSAPLT00000017362
38842670 - 39100823
258154
ENSAPLT00000013881
38851911 - 39100717
248807