Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38866664_38871636_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

38866664 - 38871636

Intron Length:

4973

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGAGAA

5'SS Class:

strong_major

3'SS Sequence:

TTAACTTGTGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

CTTTACTTAACT

Flanking Amino Acid:

LQTNRNAFTEQPSSFVQAQQ

Intron Amino Acid Position:

146

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.3

0.78

0.9

31.2

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

70.2

0.46

40.5

Minor 5ss

35.8

-1.6

3.3

46.4

48.9

Minor BPS

81.1

1.05

1.4

93.1

35.2

Associated Gene:

Gene:

SLC25A21

Ensembl Gene ID:

ENSAPLG00000013311

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017396

38842670 - 39100717

258048

ENSAPLT00000017362

38842670 - 39100823

258154

ENSAPLT00000013881

38851911 - 39100717

248807