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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_38880417_38918726_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38880417 - 38918726
Intron Length:
38310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCTTCAATA
Flanking Amino Acid:
DCFRTIFQREGLLGFYKGIL
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
75.2
35.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.4
0.68
0.8
78.2
29.1
Minor 5ss
33.6
-1.9
3.5
39
46.2
Minor BPS
74.6
0.77
1.4
83.43
30.9

Associated Gene:

Gene:
SLC25A21
Ensembl Gene ID:
ENSAPLG00000013311
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017396
38842670 - 39100717
258048
ENSAPLT00000017362
38842670 - 39100823
258154
ENSAPLT00000013881
38851911 - 39100717
248807