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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3909104_3912586_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3909104 - 3912586
Intron Length:
3483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCCAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ACTGCTTTAATT
Flanking Amino Acid:
MDLARQQQEQIARQQQQLLQ
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.6
37.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74.1
0.54
0.9
71.2
34.4
Minor 5ss
31.2
-2.1
3.5
46.7
48.6
Minor BPS
69.3
0.68
1.3
77.48
40

Associated Gene:

Gene:
SOX6
Ensembl Gene ID:
ENSAPLG00000008744
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009100
3768142 - 4089655
321514
ENSAPLT00000026177
3768142 - 4008048
239907
ENSAPLT00000025325
3774651 - 4014215
239565
ENSAPLT00000022912
3768142 - 4089655
321514