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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39129845_39131318_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
39129845 - 39131318
Intron Length:
1474

Sequence Information:

Terminal Dinucleotides:
GT-TG
5'SS Sequence:
AAG|GTAAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTGTTTTG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTGTTTTGTTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.7
37.2
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
44.3
-0.3
3.2
73.5
41.8
Minor 5ss
34.3
-1.8
3.4
47
48.3
Minor BPS
42.5
-0.5
3.4
73.17
39

Associated Gene:

Gene:
MIPOL1
Ensembl Gene ID:
ENSAPLG00000011170
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011627
39129699 - 39287318
157620