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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39131403_39133805_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
39131403 - 39133805
Intron Length:
2403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTGCTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.5
0.66
0.8
78
35.1
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
65.7
0.57
1.7
83.14
39

Associated Gene:

Gene:
MIPOL1
Ensembl Gene ID:
ENSAPLG00000011170
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011627
39129699 - 39287318
157620