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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39150338_39153160_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
39150338 - 39153160
Intron Length:
2823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTAAAAATAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TCCTCCTAAAAA
Flanking Amino Acid:
GDCNSSPAELSTVEEKGKRM
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
56.7
0.15
1
52.3
34.7
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
59.5
0.3
1.8
68.09
44.4

Associated Gene:

Gene:
MIPOL1
Ensembl Gene ID:
ENSAPLG00000011170
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011627
39129699 - 39287318
157620