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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39168555_39173706_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39168555 - 39173706
Intron Length:
5152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
CCCTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TGCTACTGATCA
Flanking Amino Acid:
RVQRLEESLKELENINPEEN
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
72.5
39.9
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
82.4
0.73
0.7
75.9
32.7
Minor 5ss
45.1
-0.5
2.8
54.8
43.4
Minor BPS
48.5
-0.1
1.9
62.27
43.3

Associated Gene:

Gene:
MIPOL1
Ensembl Gene ID:
ENSAPLG00000011170
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011627
39129699 - 39287318
157620