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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39240927_39269070_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39240927 - 39269070
Intron Length:
28144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
TGAACCTTAATG
Flanking Amino Acid:
EEMERLHVYYSSHKPLSQGM
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
67.7
0.44
1
58
38.9
Major PPT
90.7
0.92
0.6
84.9
29.9
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
68.6
0.45
1.4
66.22
41.3

Associated Gene:

Gene:
MIPOL1
Ensembl Gene ID:
ENSAPLG00000011170
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011627
39129699 - 39287318
157620