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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39315268_39317820_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
39315268 - 39317820
Intron Length:
2553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGGCTGCCCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TCCCTCCTAACC
Flanking Amino Acid:
WNSYYADTQEAYSSVPVSNM
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
72
0.55
1
71.8
31.4
Major PPT
59.3
0.21
0.9
50.3
39.3
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
54.7
0.13
1.7
63.99
41.6

Associated Gene:

Gene:
FOXA1
Ensembl Gene ID:
ENSAPLG00000024190
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041506
39313445 - 39317892
4448