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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39318959_39329543_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
39318959 - 39329543
Intron Length:
10585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGAATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTCTCTTTGAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
77.5
32.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
80.5
0.69
0.9
73.3
40.8
Minor 5ss
29.1
-2.4
2.8
34.7
41.7
Minor BPS
71
0.74
1.4
83.94
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011230
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044578
39318849 - 39388268
69420